Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7189450_7190945_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7189450 - 7190945

Intron Length:

1496

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGCTG

5'SS Class:

major

3'SS Sequence:

TTATGTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAA

U12 Branch Point Sequence:

AAAGCATCAATT

Flanking Amino Acid:

PLPCIRVAENSPPPALPPKK

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

66.2

44.9

Major BPS

67.7

0.44

38.9

Major PPT

83.1

0.75

0.9

77.4

36.6

Minor 5ss

34.4

-1.8

3.4

47.3

48.1

Minor BPS

47.2

-0.1

1.8

62.36

41.3

Associated Gene:

Gene:

RAPGEF1

Ensembl Gene ID:

ENSAPLG00000015465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016200

7174849 - 7212735

37887