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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7192583_7193130_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7192583 - 7193130
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CCCTGTTTAACC
Flanking Amino Acid:
CSRNTSCETLDQSDHYDPDY
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
68.8
0.42
1
62.5
42.3
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
55.6
0.16
1.8
60.93
45.2

Associated Gene:

Gene:
RAPGEF1
Ensembl Gene ID:
ENSAPLG00000015465
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016200
7174849 - 7212735
37887