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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7200215_7202992_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7200215 - 7202992
Intron Length:
2778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTCT
U12 Branch Point Sequence:
CCCTCTTCAGCA
Flanking Amino Acid:
PALPPKQRQLASYAASSFPS
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
73.1
0.52
0.8
69.3
29.8
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
47.7
-0.1
1.8
54.68
44.7

Associated Gene:

Gene:
RAPGEF1
Ensembl Gene ID:
ENSAPLG00000015465
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016200
7174849 - 7212735
37887