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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7234102_7234982_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7234102 - 7234982
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
CTTCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTTTTAAACC
Flanking Amino Acid:
LKGQYNFDHPDAFDNDLMHT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
68.8
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.9
0.81
0.7
80.4
24.8
Minor 5ss
41.5
-0.9
3
57.8
46.4
Minor BPS
56.6
0.19
1.7
64.58
42.1

Associated Gene:

Gene:
UCK1
Ensembl Gene ID:
ENSAPLG00000027008
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039810
7233557 - 7238527
4971