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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7240433_7240659_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7240433 - 7240659
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TCTCTCGTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TGTAACTTCACT
Flanking Amino Acid:
VLQHLSDYLCRSLLPKTMFR
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
68.7
0.46
1
71.3
34
Major PPT
76.7
0.6
0.9
68.6
37.2
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
57.1
0.3
2
78.89
42.6

Associated Gene:

Gene:
POMT1
Ensembl Gene ID:
ENSAPLG00000014827
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015508
7240258 - 7253925
13668