Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7240838_7241479_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7240838 - 7241479

Intron Length:

642

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTGACTC

5'SS Class:

major

3'SS Sequence:

CTGTCTCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGAGAT

U12 Branch Point Sequence:

GATGATCCAAGT

Flanking Amino Acid:

RRRKIYDIPEDAWQLWVSAG

Intron Amino Acid Position:

609

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.3

62.5

42.3

Major BPS

0.35

1.3

60.7

45.9

Major PPT

0.56

0.8

69.5

31.2

Minor 5ss

-1.4

3.1

51.2

45.3

Minor BPS

37.1

-0.9

51.86

42.3

Associated Gene:

Gene:

POMT1

Ensembl Gene ID:

ENSAPLG00000014827

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015508

7240258 - 7253925

13668