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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7245267_7246607_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7245267 - 7246607
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTCACTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TGTCACTCCACC
Flanking Amino Acid:
NNWWIVKDPGMQQLVVSNPP
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
70
0.5
1
67
39.8
Major PPT
64.2
0.32
1
55.6
40
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
46.4
-0.3
2.1
62.44
42.2

Associated Gene:

Gene:
POMT1
Ensembl Gene ID:
ENSAPLG00000014827
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015508
7240258 - 7253925
13668