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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_724792_725910_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
724792 - 725910
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGCAG
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAT
U12 Branch Point Sequence:
GCACCGGTAATG
Flanking Amino Acid:
LKMLMAALHQGNLSSQHISH
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
53.1
45.4
Major BPS
56.9
0.17
1.4
59
44.6
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
41.7
-0.9
3.2
55.3
48.9
Minor BPS
39.4
-0.9
2.5
41.99
43.1

Associated Gene:

Gene:
ENTPD8
Ensembl Gene ID:
ENSAPLG00000014454
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015092
722737 - 729339
6603