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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7249733_7250641_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7249733 - 7250641
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GTTTCTCTAATT
Flanking Amino Acid:
ALGGALLILLENSLITQSRF
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
84.1
30.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
81.3
0.7
0.8
77.7
29.6
Minor 5ss
43.3
-0.7
2.8
49.9
46.4
Minor BPS
69.1
0.68
1.6
85.4
34.8

Associated Gene:

Gene:
POMT1
Ensembl Gene ID:
ENSAPLG00000014827
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015508
7240258 - 7253925
13668