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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7251686_7251972_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7251686 - 7251972
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTGGACTTAATG
Flanking Amino Acid:
LWGLSYPRAVVFDEVYYGQF
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
59.8
0.17
1.7
63.96
44.3

Associated Gene:

Gene:
POMT1
Ensembl Gene ID:
ENSAPLG00000014827
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015508
7240258 - 7253925
13668