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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7252117_7252771_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7252117 - 7252771
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGAAAT
U12 Branch Point Sequence:
TTGTCCTTGAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
49.7
-0
1.4
59
44.6
Major PPT
71.8
0.49
1
71.8
33.1
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
69.7
0.48
1.5
71.8
41.2

Associated Gene:

Gene:
POMT1
Ensembl Gene ID:
ENSAPLG00000014827
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015508
7240258 - 7253925
13668