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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_726142_726593_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
726142 - 726593
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGGCC
5'SS Class:
major
3'SS Sequence:
TTTATGGGGCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCACACTAACA
Flanking Amino Acid:
VNYLLDTLIKFSFAEKWEHP
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.1
56
36.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
56.4
0.14
1.2
50.5
47.9
Minor 5ss
23.3
-3.1
3.5
32.8
42.4
Minor BPS
52.8
0.09
2
70.44
41.2

Associated Gene:

Gene:
ENTPD8
Ensembl Gene ID:
ENSAPLG00000014454
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015092
722737 - 729339
6603