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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7266685_7267127_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7266685 - 7267127
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGATT
5'SS Class:
major
3'SS Sequence:
TCTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCGATTTGAATT
Flanking Amino Acid:
PPIEFGVNPKDSDFSLPPGS
Intron Amino Acid Position:
1786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
81.4
32
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86.4
0.82
0.8
84.1
30.8
Minor 5ss
34.5
-1.8
3.4
48.9
41.5
Minor BPS
51.3
0.12
1.4
64.39
40.9

Associated Gene:

Gene:
PRRC2B
Ensembl Gene ID:
ENSAPLG00000014308
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033153
7258385 - 7289789
31405
ENSAPLT00000029774
7257290 - 7289789
32500
ENSAPLT00000029767
7259646 - 7289789
30144
ENSAPLT00000033382
7256191 - 7289789
33599