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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7269180_7270339_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7269180 - 7270339
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CAGCCTGTATCT
Flanking Amino Acid:
ERRKKEQAAQAPAKARVLQS
Intron Amino Acid Position:
1583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
84.3
0.77
0.9
85.1
29.7
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
43.4
-0.4
2.2
57.87
45.2

Associated Gene:

Gene:
PRRC2B
Ensembl Gene ID:
ENSAPLG00000014308
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033382
7256191 - 7289789
33599
ENSAPLT00000020437
7258290 - 7289789
31500
ENSAPLT00000033153
7258385 - 7289789
31405
ENSAPLT00000014979
7258290 - 7289736
31447
ENSAPLT00000029774
7257290 - 7289789
32500
ENSAPLT00000029767
7259646 - 7289789
30144