Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7271312_7272842_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7271312 - 7272842

Intron Length:

1531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGTTG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCCTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAT

U12 Branch Point Sequence:

ACAAATCTAATT

Flanking Amino Acid:

QQNGTLIKSKRSPEEGGGLG

Intron Amino Acid Position:

1467

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

70.4

42.5

Major BPS

85.7

0.89

0.8

22.2

Major PPT

85.6

0.8

0.6

81.4

23.6

Minor 5ss

38.9

-1.2

3.6

54.5

49.7

Minor BPS

44.9

-0.3

1.8

57.67

39.1

Associated Gene:

Gene:

PRRC2B

Ensembl Gene ID:

ENSAPLG00000014308

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029774

7257290 - 7289789

32500

ENSAPLT00000029767

7259646 - 7289789

30144

ENSAPLT00000020437

7258290 - 7289789

31500

ENSAPLT00000033382

7256191 - 7289789

33599

ENSAPLT00000014979

7258290 - 7289736

31447

ENSAPLT00000033153

7258385 - 7289789

31405