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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_727801_728668_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
727801 - 728668
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
GGCTCCATCAGG
Flanking Amino Acid:
VSQVETCTVNGSGISSYADN
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
41.9
-0.7
2.2
45.57
46.3

Associated Gene:

Gene:
ENTPD8
Ensembl Gene ID:
ENSAPLG00000014454
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015092
722737 - 729339
6603