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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7281171_7281556_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7281171 - 7281556
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATGACA
Flanking Amino Acid:
EEVVKDGRQKWNSWDPRRQR
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.9
0.61
1
73.3
40.8
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
58.4
0.26
1.6
71.42
34.1

Associated Gene:

Gene:
PRRC2B
Ensembl Gene ID:
ENSAPLG00000014308
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029767
7259646 - 7289789
30144
ENSAPLT00000020437
7258290 - 7289789
31500
ENSAPLT00000033382
7256191 - 7289789
33599
ENSAPLT00000014979
7258290 - 7289736
31447
ENSAPLT00000033153
7258385 - 7289789
31405
ENSAPLT00000029774
7257290 - 7289789
32500