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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7282395_7282840_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7282395 - 7282840
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CATTTCCCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTATTTCTAACT
Flanking Amino Acid:
FRQYQMNDQDGKENRLGLSR
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.7
0.49
0.8
65.9
29.9
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
60.5
0.41
1.7
76.75
40

Associated Gene:

Gene:
PRRC2B
Ensembl Gene ID:
ENSAPLG00000014308
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020437
7258290 - 7289789
31500
ENSAPLT00000033382
7256191 - 7289789
33599
ENSAPLT00000014979
7258290 - 7289736
31447
ENSAPLT00000033153
7258385 - 7289789
31405
ENSAPLT00000029774
7257290 - 7289789
32500
ENSAPLT00000029767
7259646 - 7289789
30144