About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7287350_7288329_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7287350 - 7288329
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCGCA
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTGTTC
Flanking Amino Acid:
QKQTQSITQESTNSVPGGPK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66
40.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
35.2
-1.7
3.5
47.4
48.2
Minor BPS
48.1
-0.1
3.4
76.89
33.8

Associated Gene:

Gene:
PRRC2B
Ensembl Gene ID:
ENSAPLG00000014308
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014979
7258290 - 7289736
31447
ENSAPLT00000033153
7258385 - 7289789
31405
ENSAPLT00000029774
7257290 - 7289789
32500
ENSAPLT00000029767
7259646 - 7289789
30144
ENSAPLT00000020437
7258290 - 7289789
31500
ENSAPLT00000033382
7256191 - 7289789
33599