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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7288433_7288647_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7288433 - 7288647
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTGATCTCACCT
Flanking Amino Acid:
ANKQDQPDQKSSSATAAQLQ
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.9
43.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83.3
0.75
0.7
76.5
32.1
Minor 5ss
32.2
-2
3.1
41.2
45.1
Minor BPS
50.5
0.09
1.9
72.41
44.5

Associated Gene:

Gene:
PRRC2B
Ensembl Gene ID:
ENSAPLG00000014308
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029774
7257290 - 7289789
32500
ENSAPLT00000029767
7259646 - 7289789
30144
ENSAPLT00000020437
7258290 - 7289789
31500
ENSAPLT00000033382
7256191 - 7289789
33599
ENSAPLT00000014979
7258290 - 7289736
31447
ENSAPLT00000033153
7258385 - 7289789
31405