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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7288826_7289621_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7288826 - 7289621
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
CCTTTCTCACTA
Flanking Amino Acid:
GKSIEAIRTTVIPRHGLQSL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
72.6
0.51
0.8
66.9
34.1
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
48.4
-0.1
1.8
58.18
42.5

Associated Gene:

Gene:
PRRC2B
Ensembl Gene ID:
ENSAPLG00000014308
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029767
7259646 - 7289789
30144
ENSAPLT00000020437
7258290 - 7289789
31500
ENSAPLT00000033382
7256191 - 7289789
33599
ENSAPLT00000014979
7258290 - 7289736
31447
ENSAPLT00000033153
7258385 - 7289789
31405
ENSAPLT00000029774
7257290 - 7289789
32500