Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7374735_7375241_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7374735 - 7375241

Intron Length:

507

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTGTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TGCTCTTAAAAT

Flanking Amino Acid:

ANTGGTVFGQQPSSSSGGLF

Intron Amino Acid Position:

1550

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

100

1.18

0.7

100

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

73.3

0.52

0.9

64.9

41.3

Minor 5ss

31.3

-2.1

50.6

45.9

Minor BPS

57.2

0.31

1.8

73.53

43.4

Associated Gene:

Gene:

NUP214

Ensembl Gene ID:

ENSAPLG00000013269

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019157

7365124 - 7400052

34929

ENSAPLT00000013944

7365124 - 7400052

34929