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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_73859_74171_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73859 - 74171
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CATGCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
GGTCCCTCATGC
Flanking Amino Acid:
CLGSIQHLKNRFGDGYMITV
Intron Amino Acid Position:
2213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
68.3
0.41
1
61.5
39.6
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
44.3
-0.4
2
54.07
43.1

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439
ENSAPLT00000036122
70053 - 112105
42053