Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7390131_7390460_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7390131 - 7390460

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACCTT

5'SS Class:

strong_major

3'SS Sequence:

TCTGGTATTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACACAT

U12 Branch Point Sequence:

TCTTCTGGTATT

Flanking Amino Acid:

KTPPVRSTAPANLSRSAFLS

Intron Amino Acid Position:

642

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

75.1

41.1

Major BPS

57.6

0.19

64.6

32.2

Major PPT

76.6

0.6

69.7

40.3

Minor 5ss

43.2

-0.8

3.3

64.9

46.4

Minor BPS

44.5

-0.3

2.3

67.79

43.6

Associated Gene:

Gene:

NUP214

Ensembl Gene ID:

ENSAPLG00000013269

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019157

7365124 - 7400052

34929

ENSAPLT00000013944

7365124 - 7400052

34929