Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7395864_7396526_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7395864 - 7396526

Intron Length:

663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTAAATTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCTTTTTAAATT

Flanking Amino Acid:

LKASSPAPATVARPAQSMPS

Intron Amino Acid Position:

326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

35.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

76.6

0.6

0.9

68.1

42.1

Minor 5ss

36.6

-1.5

3.3

51.4

45.5

Minor BPS

63.3

0.5

1.6

78.3

39.3

Associated Gene:

Gene:

NUP214

Ensembl Gene ID:

ENSAPLG00000013269

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019157

7365124 - 7400052

34929

ENSAPLT00000013944

7365124 - 7400052

34929