Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7402477_7404660_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7402477 - 7404660

Intron Length:

2184

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCTGCAGGC

5'SS Class:

major

3'SS Sequence:

CAGCCTCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCACAC

U12 Branch Point Sequence:

CATGCATCACAC

Flanking Amino Acid:

RINTASDGKVSLQEKGKK*

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.5

0.25

1.4

56.1

42.6

Major BPS

0.22

66.7

Major PPT

64.2

0.32

0.9

54.3

36.2

Minor 5ss

-3.3

33.5

41.9

Minor BPS

-0.8

46.2

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029721

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043477

7402452 - 7409443

6992