Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7404846_7409437_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7404846 - 7409437

Intron Length:

4592

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAT|GCGAGGGGC

5'SS Class:

major

3'SS Sequence:

GAACAGTTTGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACTACAT

U12 Branch Point Sequence:

TGCCCAGCAACT

Flanking Amino Acid:

MDKHSWYHGPVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.3

70.3

33.7

Major BPS

61.4

0.28

1.1

36.5

Major PPT

46.5

-0.2

1.7

46.5

45.1

Minor 5ss

16.2

-3.9

3.9

27.1

37.1

Minor BPS

-0.4

2.3

63.97

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029721

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043477

7402452 - 7409443

6992