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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_741349_741774_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
741349 - 741774
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
TCTTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
ACATCAGCAATT
Flanking Amino Acid:
YQPPISGQFFAFSAFYYNFK
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60.5
39.7
Major BPS
61.1
0.28
1
67
29.8
Major PPT
84.3
0.77
0.8
81.1
31
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
42.9
-0.4
2.3
60.66
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013600
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014204
739368 - 748342
8975