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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7458480_7459616_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7458480 - 7459616
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
TCAGGCTGAGTA
Flanking Amino Acid:
LHTRSLKYGKLGQGVLVQVS
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
82.3
0.73
0.8
76.8
31.9
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
41.3
-0.6
2
48.54
42.5

Associated Gene:

Gene:
EXOSC2
Ensembl Gene ID:
ENSAPLG00000012516
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013048
7457110 - 7461396
4287