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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7459918_7460255_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7459918 - 7460255
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTTTCTGTAATT
Flanking Amino Acid:
SSMNLPGGELRRRSAEDELA
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
90.2
0.9
0.7
88.7
28.3
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
70.8
0.73
2
91.31
32.6

Associated Gene:

Gene:
EXOSC2
Ensembl Gene ID:
ENSAPLG00000012516
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013048
7457110 - 7461396
4287