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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7460346_7460746_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7460346 - 7460746
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTGAGTG
Flanking Amino Acid:
GDIVVGRITEVQQKRWKVET
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
53
-0
1.7
62.33
39.9

Associated Gene:

Gene:
EXOSC2
Ensembl Gene ID:
ENSAPLG00000012516
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013048
7457110 - 7461396
4287