Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7482698_7483409_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7482698 - 7483409

Intron Length:

712

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGAA

5'SS Class:

major

3'SS Sequence:

TTTTCCCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TTTTTTTTCCCC

Flanking Amino Acid:

KAWEEYYKKQSHAASAASQA

Intron Amino Acid Position:

519

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

67.4

33.4

Major BPS

79.7

0.74

79.6

35.6

Major PPT

86.6

0.82

0.7

78.3

30.6

Minor 5ss

27.8

-2.5

27.4

37.6

Minor BPS

44.1

-0.4

3.6

72.92

38.9

Associated Gene:

Gene:

FUBP3

Ensembl Gene ID:

ENSAPLG00000011238

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033761

7482048 - 7519393

37346

ENSAPLT00000011815

7481474 - 7519393

37920