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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7493741_7494831_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7493741 - 7494831
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
AAAACACTAATA
Flanking Amino Acid:
IINELILTAQERDGFGSLAV
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
33.5
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
69.7
0.44
1
67.8
38
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
46
-0.3
1.9
55.39
36.3

Associated Gene:

Gene:
FUBP3
Ensembl Gene ID:
ENSAPLG00000011238
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033761
7482048 - 7519393
37346
ENSAPLT00000011815
7481474 - 7519393
37920