Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7494933_7495599_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7494933 - 7495599

Intron Length:

667

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTGTG

5'SS Class:

major

3'SS Sequence:

CTTCTCTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTCCTTTTAATT

Flanking Amino Acid:

DAGVRIQFKPDDGISPERVA

Intron Amino Acid Position:

310

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.2

40.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.3

0.77

0.7

79.3

26.3

Minor 5ss

38.7

-1.3

49.5

46.8

Minor BPS

63.5

0.5

1.3

71.97

40.1

Associated Gene:

Gene:

FUBP3

Ensembl Gene ID:

ENSAPLG00000011238

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033761

7482048 - 7519393

37346

ENSAPLT00000011815

7481474 - 7519393

37920