Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7501858_7502703_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7501858 - 7502703

Intron Length:

846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

AAGCATCTAACC

Flanking Amino Acid:

ESGCKIQIAPDSGGMPERPC

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.8

31.7

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

86.6

0.82

0.8

80.9

Minor 5ss

31.7

-2.1

3.3

42.5

44.5

Minor BPS

45.9

-0.3

1.8

53.52

37.3

Associated Gene:

Gene:

FUBP3

Ensembl Gene ID:

ENSAPLG00000011238

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033761

7482048 - 7519393

37346

ENSAPLT00000011815

7481474 - 7519393

37920