About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7502776_7504199_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7502776 - 7504199
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GAACTCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GCTTCTTGAACT
Flanking Amino Acid:
FKVPDKMVGFIIGRGGEQIS
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.3
34.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
68.3
0.41
1
63.2
42.4
Minor 5ss
38.9
-1.3
2.7
49
34.4
Minor BPS
70.7
0.73
1.4
81.55
40

Associated Gene:

Gene:
FUBP3
Ensembl Gene ID:
ENSAPLG00000011238
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033761
7482048 - 7519393
37346
ENSAPLT00000011815
7481474 - 7519393
37920