About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7506738_7512817_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7506738 - 7512817
Intron Length:
6080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
ATTCCTTTAACA
Flanking Amino Acid:
GVQKRPLDDGGLRVSGLHGA
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
77.9
0.63
0.9
73.6
35
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
80
0.94
1
83.43
29.9

Associated Gene:

Gene:
FUBP3
Ensembl Gene ID:
ENSAPLG00000011238
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033761
7482048 - 7519393
37346
ENSAPLT00000011815
7481474 - 7519393
37920