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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7530910_7532142_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7530910 - 7532142
Intron Length:
1233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CCGTCCCCACAG
Flanking Amino Acid:
PCSLYNEELVSMNVQGDYEP
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
85.2
0.79
0.7
81
24.1
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
37.5
-1
2
37.11
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021907
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028224
7530307 - 7534810
4504