Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7579590_7580677_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7579590 - 7580677

Intron Length:

1088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCGGCT

5'SS Class:

major

3'SS Sequence:

TCTGCGCCCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCCCAG

U12 Branch Point Sequence:

CTCCTCCCAGCC

Flanking Amino Acid:

ESRPLPLSSSRYTVLPSGSL

Intron Amino Acid Position:

1170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.2

62.3

41.3

Major BPS

44.5

-0.3

1.6

55.8

41.7

Major PPT

56.6

0.15

1.1

52.7

37.1

Minor 5ss

36.3

-1.5

3.8

56.7

47.5

Minor BPS

40.3

-0.7

1.9

48.29

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023157

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022499

7578734 - 7590133

11400