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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7581648_7582352_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7581648 - 7582352
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCCAT
U12 Branch Point Sequence:
ATGTCCAGCAGG
Flanking Amino Acid:
QRQEVALVVHVPPSIEPGPA
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.7
38.7
Major BPS
48.8
-0
1.5
58.2
48.3
Major PPT
77
0.61
0.8
68.8
37.2
Minor 5ss
25.8
-2.8
3.2
33.5
42
Minor BPS
39.5
-0.9
2.3
47.47
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023157
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022499
7578734 - 7590133
11400