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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7587606_7587948_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7587606 - 7587948
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CGCCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
TCCAGGTTAATC
Flanking Amino Acid:
FHLDKQQVKEVLKWVEEAIQ
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
63.8
0.31
0.9
53.4
36.7
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
44.2
-0.4
2.4
54
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023157
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022499
7578734 - 7590133
11400