About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7588911_7589575_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7588911 - 7589575
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TCTGTGTTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGACCTGGGACC
Flanking Amino Acid:
NYALVPFHDPEVGPATLTTD
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
77.8
0.63
0.9
72.2
37.8
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
42.9
-0.5
2.1
53.42
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023157
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022499
7578734 - 7590133
11400