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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7632362_7633161_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7632362 - 7633161
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTACAG
Flanking Amino Acid:
VPFQWKWLYQLLDEMATLVF
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.2
34.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
85.1
28.5
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
57
0.08
2
69.83
43

Associated Gene:

Gene:
GPR107
Ensembl Gene ID:
ENSAPLG00000009595
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010062
7628946 - 7657654
28709
ENSAPLT00000027037
7624092 - 7657654
33563
ENSAPLT00000026341
7624092 - 7657654
33563