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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7645571_7646576_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7645571 - 7646576
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TATGAAGTAACA
Flanking Amino Acid:
TKSLSLVFHAIDYHYISSQG
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
78.6
37.5
Major BPS
75.5
0.63
1
66
40.9
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
38.7
-1.3
3
51.4
45.2
Minor BPS
44.5
-0.4
2.4
62.81
42.9

Associated Gene:

Gene:
GPR107
Ensembl Gene ID:
ENSAPLG00000009595
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027037
7624092 - 7657654
33563
ENSAPLT00000026341
7624092 - 7657654
33563
ENSAPLT00000010062
7628946 - 7657654
28709