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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7646653_7647565_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7646653 - 7647565
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGGCTTTTAACT
Flanking Amino Acid:
TVWIHILRKRRNDVFKIHWL
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
68.7
0.66
1.2
77.57
38.9

Associated Gene:

Gene:
GPR107
Ensembl Gene ID:
ENSAPLG00000009595
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027037
7624092 - 7657654
33563
ENSAPLT00000026341
7624092 - 7657654
33563
ENSAPLT00000010062
7628946 - 7657654
28709