About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7647700_7648458_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7647700 - 7648458
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACACCTTTAATA
Flanking Amino Acid:
NNDKQLFSLDIEITEKNPES
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.3
0.61
1
74.5
39.1
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
63.9
0.43
1.2
63.85
36.6

Associated Gene:

Gene:
GPR107
Ensembl Gene ID:
ENSAPLG00000009595
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026341
7624092 - 7657654
33563
ENSAPLT00000010062
7628946 - 7657654
28709
ENSAPLT00000027037
7624092 - 7657654
33563