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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7648573_7649411_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7648573 - 7649411
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
ACTTTCCTATTC
Flanking Amino Acid:
RNDGGTFSFQFFFNISSDNQ
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
48.4
-0.1
1.9
60.61
39.2

Associated Gene:

Gene:
GPR107
Ensembl Gene ID:
ENSAPLG00000009595
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027037
7624092 - 7657654
33563
ENSAPLT00000026341
7624092 - 7657654
33563
ENSAPLT00000010062
7628946 - 7657654
28709