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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7649469_7649667_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7649469 - 7649667
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAAAT
U12 Branch Point Sequence:
CTGCCTAGAAAT
Flanking Amino Acid:
KSQRSTTTSQSIIEQQHRVR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
59.4
0.23
1.2
65.3
38.6
Major PPT
86.1
0.81
0.7
79.7
32.2
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
44.8
-0.3
1.8
60.59
42.6

Associated Gene:

Gene:
GPR107
Ensembl Gene ID:
ENSAPLG00000009595
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026341
7624092 - 7657654
33563
ENSAPLT00000010062
7628946 - 7657654
28709
ENSAPLT00000027037
7624092 - 7657654
33563