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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7649703_7651178_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7649703 - 7651178
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTACCATTAATA
Flanking Amino Acid:
EETEQNTDGKDKKSQRSTTT
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.7
0.71
0.8
74.5
35.4
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
60.8
0.33
1.6
68.34
37.3

Associated Gene:

Gene:
GPR107
Ensembl Gene ID:
ENSAPLG00000009595
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026341
7624092 - 7657654
33563
ENSAPLT00000010062
7628946 - 7657654
28709
ENSAPLT00000027037
7624092 - 7657654
33563