Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7686269_7692880_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7686269 - 7692880

Intron Length:

6612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TGCTTCATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TTTTGCTTCATT

Flanking Amino Acid:

PPYLCCLKPKDQFDNLEKHT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

1.2

80.7

33.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

79.9

0.67

0.9

73.8

35.4

Minor 5ss

32.7

-2

3.2

43.9

43.8

Minor BPS

63.3

0.5

2.2

87.41

38.9

Associated Gene:

Gene:

FNBP1

Ensembl Gene ID:

ENSAPLG00000009326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045082

7686194 - 7751665

65472